PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc003485.1_g00007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 679aa    MW: 77944.8 Da    PI: 8.0105
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc003485.1_g00007.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.15.3e-2262155190
                     FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkle 82 
                              +fY+e+Ak++GFs+r+++++ +    +  t+r fvC + gk+  +  +++k +r+r+++r+gC+a ++++k++     +w+vt ++
  Itr_sc003485.1_g00007.1  62 EFYSEFAKRCGFSIRRHRTEGKeGVGKGLTRRYFVCHRAGKTPVKPANENKPQRNRKSSRCGCQAYMRISKNSdlgLPEWRVTGFV 147
                              6**************9998876356667999*****************99**********************9765579******* PP

                     FAR1  83 leHnHela 90 
                              ++HnHel 
  Itr_sc003485.1_g00007.1 148 NHHNHELL 155
                              ******96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.7E-1862155IPR004330FAR1 DNA binding domain
PfamPF105511.4E-19278369IPR018289MULE transposase domain
PROSITE profilePS509669.483556589IPR007527Zinc finger, SWIM-type
PfamPF044343.5E-7562587IPR007527Zinc finger, SWIM-type
SMARTSM005752.0E-5564591IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    Send to blast
MSGEAGNMML VYGDPSDQRS FSLDDTSSTE ESPEQTRLSL ETTNESIPYM GQRFPTHDAA  60
YEFYSEFAKR CGFSIRRHRT EGKEGVGKGL TRRYFVCHRA GKTPVKPANE NKPQRNRKSS  120
RCGCQAYMRI SKNSDLGLPE WRVTGFVNHH NHELLEPNQV RFLPAYRTIS DADKSRILMF  180
AKTGISVQQM MRLLELEKCV EPGYLPFTEK DVRNLLQSFR KVDPEDESID LLRMCRNIKE  240
RDPNFKYDFT LDCNNRLENI AWSYASSIQS YEIFGDAVVF DTTHCLTAFD MPMGIWVGVN  300
NYGMPCFFGC VLLREENVRS FSWALKAFLG FMNGKAPQTV LTDQNMCLKE AIAVEMPATK  360
HALCIWLIVA KFPSWFNAVL GERYNEWKAE FYRLYNLESI DDFELGWRDM VNLFGLHNNR  420
HIATLFSLRS LWALPYLRSH FFAGMVTAGH SKSINAFIQR FLSAQTRLAH FVEQVAVAVD  480
FKDQTGEQQT MQQNLQNICL KTGAPMESHA ATVLTPFAFS KLQEQLVLAA HYASFQLDDG  540
FLVRHHTKAE GGRKVYWVPR EGIIGCSCQL FEFSGILCRH ALRVLSTGNC FQIPERYLPF  600
RWRRISLPSS KAPQTNQNDH TERVQSLQSL VSNLVTESAK SKERLDFASE QISILLTQIR  660
EQPVYSQEVR ELSSIQRNL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015062970.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11 isoform X1
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A067LDA90.0A0A067LDA9_JATCU; Uncharacterized protein
STRINGPOPTR_0004s23620.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA108962124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11